ITS1-ITS4 Nuclear Ribosomal DNA (nrDNA) Sequence Analysis and Secondary Structure Assessment of Genetic Relationships Between Arbuscular Mycorrhizal Fungus Species.


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Furan M. A. (Yürütücü), ZARİFİ R.

Yükseköğretim Kurumları Destekli Proje, BAP Y.Lisans, 2024 - 2025

  • Proje Türü: Yükseköğretim Kurumları Destekli Proje
  • Başlama Tarihi: Mart 2024
  • Bitiş Tarihi: Temmuz 2025

Proje Özeti

Mycorrhizae are symbiotic organisms that form mutualistic associations with 

plant roots, facilitating plant-soil continuity. They play a vital role in improving soil 

structure, enhancing plant tolerance to biotic and abiotic stresses, maintaining ecological 

balance, and promoting sustainable agriculture. Mycorrhizal fungi colonize 

approximately 85% of terrestrial plants and are key contributors to biodiversity and 

ecosystem stability. These fungi differ in morphology, spore formation, and mycelial 

architecture, and are taxonomically classified based on these features. Among them, 

Arbuscular Mycorrhizal Fungi (AMF) represent a widely distributed and agriculturally 

important group in the rhizosphere. As obligate biotrophs, AMF depend on host-derived 

carbon while enhancing The process of water absorption, phosphate, nitrogen, Plus other 

important nutrients via extraradical and intraradical hyphae, arbuscules, and root 

apoplasts. Unlike other mycorrhizal types, AMF form tree-like arbuscules within root 

cortical cells, acting as key sites for nutrient exchange between fungus and host. 

In this study, universal ITS1 and ITS4 primers were used to amplify the ITS 

regions from genomic DNA isolated from AMF species maintained in culture stocks at 

the Mycology Laboratory, Faculty of Agriculture, Van Yüzüncü Yıl University. The 

amplified ITS1 and ITS4 regions of rDNA were analyzed using various bioinformatics 

tools, including SnapGene, MEGA X, ITOL, Python ve Alifold Sever Viewer. 

Phylogenetic analysis based on sequence alignments of the ITS1 and ITS4 regions 

revealed that the secondary structure derived from these sequences is highly stable. Our 

results demonstrate that when combined with phylogenetic tree analysis, ITS1 and ITS4 

markers serve as effective molecular tools for the identification of five AMF species.