Eğitim Bilgileri
2007 - 2012
2007 - 2012Doktora
State University of New York at Buffalo, Graduate School, Physics, Amerika Birleşik Devletleri
2001 - 2004
2001 - 2004Yüksek Lisans
Harran Üniversitesi, Fen Bilimleri Enstitüsü, Fizik, Türkiye
1996 - 2000
1996 - 2000Lisans
Dicle Üniversitesi, Eğitim Fakültesi, Fizik, Türkiye
Araştırma Alanları
Tıp
Sağlık Bilimleri
Temel Tıp Bilimleri
Biyofizik
Bilgisayar Bilimleri
Yazılım
Yazılımla Hesaplama
Fizik
Atom ve Molekül Fiziği
Atomik ve moleküler etkileşimler
Temel Bilimler
Mühendislik ve Teknoloji
Akademik Unvanlar / Görevler
2015 - Devam Ediyor
2015 - Devam EdiyorDoç. Dr.
Van Yüzüncü Yıl Üniversitesi, Fen Fakültesi, Fizik Bölümü
Yönetimsel Görevler
2015 - 2016
2015 - 2016Erasmus Programı Kurum Koordinatörü
Van Yüzüncü Yıl Üniversitesi, Fen Fakültesi
Yönetilen Tezler
2016
2016Yüksek Lisans
Dynamics of Hepatitis C NS5B Polymerase Protein Studied with Molecular Dynamics and Elastic Network Model
Tekpınar M.
M.ASAFI(Öğrenci)
2016
2016Yüksek Lisans
Adenilat Kinaz Enziminin Konformasyonel Dönüşümlerinin Moleküler Dinamik Yöntemi ile İncelenmesi
Tekpınar M.
H.UNAN(Öğrenci)
SCI, SSCI ve AHCI İndekslerine Giren Dergilerde Yayınlanan Makaleler
2023
2023Building Quantitative Bridges between Dynamics and Sequences of SARS-CoV-2 Main Protease and a Diverse Set of Thirty-Two Proteins
Yildirim A., Tekpinar M.
Journal of Chemical Information and Modeling
, cilt.63, sa.1, ss.9-19, 2023 (SCI-Expanded)
2022
2022Impact of dimerization and N3 binding on molecular dynamics of SARS-CoV and SARS-CoV-2 main proteases
Tekpinar M., Yildirim A.
Journal of Biomolecular Structure and Dynamics
, cilt.40, sa.14, ss.6243-6254, 2022 (SCI-Expanded)
2021
2021How cyanophage S-2L rejects adenine and incorporates 2-aminoadenine to saturate hydrogen bonding in its DNA
Czernecki D., Legrand P., Tekpinar M., Rosario S., Kaminski P., Delarue M.
Nature Communications
, cilt.12, sa.1, 2021 (SCI-Expanded)
2021
2021Extracting Dynamical Correlations and Identifying Key Residues for Allosteric Communication in Proteins by correlationplus
Tekpinar M., Neron B., Delarue M.
Journal of Chemical Information and Modeling
, cilt.61, sa.10, ss.4832-4838, 2021 (SCI-Expanded)
2021
2021Competing Roles of Ca2+and Nonmuscle Myosin IIA on the Dynamics of the Metastasis-Associated Protein S100A4
Yildirim A., Tekpinar M., Wassenaar T. A.
Journal of Physical Chemistry B
, cilt.125, sa.36, ss.10059-10071, 2021 (SCI-Expanded)
2018
2018Flexible fitting to cryo-electron microscopy maps with coarse-grained elastic network models
Tekpinar M.
MOLECULAR SIMULATION
, cilt.44, sa.8, ss.688-696, 2018 (SCI-Expanded)
2015
2015Molecular dynamics study of the effect of active site protonation on Helicobacter pylori 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
Tekpinar M., Yildirim A., WASSENAAR T. A.
EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS
, cilt.44, sa.8, ss.685-696, 2015 (SCI-Expanded)
2015
2015Opening mechanism of adenylate kinase can vary according to selected molecular dynamics force field
UNAN H., Yildirim A., Tekpinar M.
JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN
, cilt.29, sa.7, ss.655-665, 2015 (SCI-Expanded)
2014
2014Unzipping of neuronal snare protein with steered molecular dynamics occurs in three steps
Tekpinar M., ZHENG W.
JOURNAL OF MOLECULAR MODELING
, cilt.20, sa.8, 2014 (SCI-Expanded)
2014
2014Molecular dynamics investigation of Helicobacter pylori chemotactic protein CheY1 and two mutants
Yildirim A., Tekpinar M., WASSENAAR T. A.
JOURNAL OF MOLECULAR MODELING
, cilt.20, sa.4, 2014 (SCI-Expanded)
2014
2014High-Resolution Modeling of Protein Structures Based on Flexible Fitting of Low-Resolution Structural Data
ZHENG W., Tekpinar M.
BIOMOLECULAR MODELLING AND SIMULATIONS
, cilt.96, ss.267-284, 2014 (SCI-Expanded)
2013
2013Coarse-grained and all-atom modeling of structural states and transitions in hemoglobin
Tekpinar M., ZHENG W.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
, cilt.81, sa.2, ss.240-252, 2013 (SCI-Expanded)
2012
2012Structure-Based Simulations of the Trans location Mechanism of the Hepatitis C Virus NS3 Helicase along Single-Stranded Nucleic Acid
ZHENG W., Tekpinar M.
BIOPHYSICAL JOURNAL
, cilt.103, sa.6, ss.1343-1353, 2012 (SCI-Expanded)
2011
2011Accurate Flexible Fitting of High-Resolution Protein Structures to Small-Angle X-Ray Scattering Data Using a Coarse-Grained Model with Implicit Hydration Shell
ZHENG W., Tekpinar M.
BIOPHYSICAL JOURNAL
, cilt.101, sa.12, ss.2981-2991, 2011 (SCI-Expanded)
2010
2010Predicting order of conformational changes during protein conformational transitions using an interpolated elastic network model
Tekpinar M., ZHENG W.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
, cilt.78, sa.11, ss.2469-2481, 2010 (SCI-Expanded)
Hakemli Bilimsel Toplantılarda Yayımlanmış Bildiriler
2016
2016Comparative Investigation of Normal Modes and Molecular Dynamics of Hepatitis C NS5B Protein
Asafi M., Yildirim A., Tekpinar M.
1st International Physics Conference at the Anatolian Peak, IPCAP 2016, Erzurum, Türkiye, 25 - 27 Şubat 2016, cilt.707, (Tam Metin Bildiri)
2015
2015A MOLECULAR MODELLING APPROACH TO RATIONALE THE INHIBITORY ACTIVITY OF DERIVATIVES OF COUMARIN AGAINST CARBONIC ANHYDRASE ISOFORMS II
BOYLUĞ Z., UNAN H., Tekpınar M., EROĞLU E.
11th International Symposium on Pharmaceutical Sciences (ISOPS-11), Ankara, Türkiye, 9 - 12 Haziran 2015, ss.63-64, (Özet Bildiri)
2015
2015Interactions of coumarins with two cytosolic carbonic anhydrases measured with steered molecular dynamics simulations
UNAN H., BOYLUĞ Z., Tekpınar M., EROĞLU E.
11th International Symposium on Pharmaceutical Sciences (ISOPS-11), Ankara, Türkiye, 9 - 12 Haziran 2015, ss.262-263, (Tam Metin Bildiri)
2015
2015Easy GROMACS A Graphical User Interface for GROMACS Molecular Dynamics Simulation Package
DİZKIRICI A., TEKPINAR M.
American Physical Society 2015 Annual Meeting, San-Antonio, Kuzey Mariana Adaları, 2 - 06 Mart 2015
2014
2014Adenilate Kinaz Proteininin Kapalı Konformasyondan Açık Konformasyona Geçişinin Moleküler Dinamik Yöntemi ile İncelenmesi
YILDIRIM A., Unan H., TEKPINAR M.
I.Ulusal Hesaplamalı Kimya Çalıştayı, Türkiye, 29 - 31 Mayıs 2014, (Özet Bildiri)
Kitaplar
2014
2014Analysis of Protein Conformational Transitions Using Elastic Network Model
ZHENG W., TEKPINAR M.
Protein Dynamics, Livesay, Dennis R., Editör, Humana Press - Springer, New York, ss.159-172, 2014
2013
2013Analysis of Protein Conformational Changes with Elastic Network Model
ZHENG W., Tekpınar M.
Protein Dynamics, Livesay D., Editör, Springer-Verlag , New York, ss.239-251, 2013
Desteklenen Projeler
2015 - 2016
2015 - 2016Adenilat Kinaz Enziminin Konformasyonel Dönüşümlerinin Moleküler Dinamik Yöntemi ile İncelenmesi
Yükseköğretim Kurumları Destekli Proje
Tekpınar M. (Yürütücü)
Bilimsel Kuruluşlardaki Üyelikler / Görevler
2012 - Devam Ediyor
2012 - Devam EdiyorAmerican Physical Society
Üye
Bilimsel Yayınlarda Hakemlikler
Kasım 2016
Kasım 2016Journal of Molecular Modeling
SCI Kapsamındaki Dergi
Bilimsel Projelerde Hakemlikler
Temmuz 2016
Temmuz 2016TÜBİTAK Projesi
Kongre ve Sempozyum Katılımı Faaliyetleri
01 Şubat 2016 - 01 Şubat 2016
01 Şubat 2016 - 01 Şubat 2016