Exploring the Genetic Diversity and Population Structure of Turkish Laurel Germplasm by the iPBS-Retrotransposon Marker System

Karik U., Nadeem M. A., Habyarimana E., ERCİŞLİ S., Yıldız M., Yilmaz A., ...Daha Fazla

AGRONOMY-BASEL, cilt.9, sa.10, 2019 (SCI-Expanded) identifier identifier

  • Yayın Türü: Makale / Tam Makale
  • Cilt numarası: 9 Sayı: 10
  • Basım Tarihi: 2019
  • Doi Numarası: 10.3390/agronomy9100647
  • Dergi Adı: AGRONOMY-BASEL
  • Derginin Tarandığı İndeksler: Science Citation Index Expanded (SCI-EXPANDED), Scopus
  • Anahtar Kelimeler: Laurus nobilis, medicinal plant, mobile genomic elements, germplasm characterization, Mediterranean region, ANTIMICROBIAL ACTIVITY, MORPHOLOGICAL TRAITS, ESSENTIAL OILS, L. ACCESSIONS, NOBILIS L., CONSERVATION, WILD, DIFFERENTIATION, VARIABILITY, SOFTWARE
  • Van Yüzüncü Yıl Üniversitesi Adresli: Evet

Özet

Laurel is a medicinally important plant and is known to the world for its essential oil. Turkey is the main market in the laurel leaf trade by sharing about 90% of the world trade. Here we made an effort to elucidate genetic diversity and population structure of 94 Turkish laurel genotypes collected from 26 provinces and four geographical regions using inter-primer binding site (iPBS) retrotransposon markers. A total of 13 most polymorphic primers were selected which yielded 195 total bands, of which 84.10% were found polymorphic. Mean polymorphism information content (PIC) was (0.361) and diversity indices including mean effective number of alleles (1.36), mean Shannon's information index (0.35) and overall gene diversity (0.22) revealed the existence of sufficient amount of genetic diversity in the studied plant material. Most diversity was found in genotypes collected from the Mediterranean region. Analysis of molecular variance (AMOVA) revealed that most of the variation (85%) in Turkish laurel germplasm is due to differences within populations. Model-based structure, principal coordinate analysis (PCoA) and neighbor-joining algorithms were found in agreement and clustered the studied germplasm according to their collection provinces and regions. This is a very first study exploring the genetic diversity and population structure of laurel germplasm using iPBS-retrotransposon marker system. We believe that information provided in this work will be helpful for the scientific community to take more interest in this forgotten but the medicinally important plant.