Yayınlar & Eserler

Yayın Ağı
SCI, SSCI ve AHCI İndekslerine Giren Dergilerde Yayınlanan Makaleler

Building Quantitative Bridges between Dynamics and Sequences of SARS-CoV-2 Main Protease and a Diverse Set of Thirty-Two Proteins

Yildirim A., Tekpinar M.
Journal of Chemical Information and Modeling , cilt.63, sa.1, ss.9-19, 2023 (SCI-Expanded) identifier identifier

Impact of dimerization and N3 binding on molecular dynamics of SARS-CoV and SARS-CoV-2 main proteases

Tekpinar M., Yildirim A.
Journal of Biomolecular Structure and Dynamics , cilt.40, sa.14, ss.6243-6254, 2022 (SCI-Expanded) Creative Commons License Sürdürülebilir Kalkınma identifier identifier

How cyanophage S-2L rejects adenine and incorporates 2-aminoadenine to saturate hydrogen bonding in its DNA

Czernecki D., Legrand P., Tekpinar M., Rosario S., Kaminski P., Delarue M.
Nature Communications , cilt.12, sa.1, 2021 (SCI-Expanded) identifier identifier

Extracting Dynamical Correlations and Identifying Key Residues for Allosteric Communication in Proteins by correlationplus

Tekpinar M., Neron B., Delarue M.
Journal of Chemical Information and Modeling , cilt.61, sa.10, ss.4832-4838, 2021 (SCI-Expanded) Sürdürülebilir Kalkınma identifier identifier

Competing Roles of Ca2+and Nonmuscle Myosin IIA on the Dynamics of the Metastasis-Associated Protein S100A4

Yildirim A., Tekpinar M., Wassenaar T. A.
Journal of Physical Chemistry B , cilt.125, sa.36, ss.10059-10071, 2021 (SCI-Expanded) identifier identifier

Flexible fitting to cryo-electron microscopy maps with coarse-grained elastic network models

Tekpinar M.
MOLECULAR SIMULATION , cilt.44, sa.8, ss.688-696, 2018 (SCI-Expanded) identifier identifier

Molecular dynamics study of the effect of active site protonation on Helicobacter pylori 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase

Tekpinar M., Yildirim A., WASSENAAR T. A.
EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS , cilt.44, sa.8, ss.685-696, 2015 (SCI-Expanded) identifier identifier identifier

Opening mechanism of adenylate kinase can vary according to selected molecular dynamics force field

UNAN H., Yildirim A., Tekpinar M.
JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN , cilt.29, sa.7, ss.655-665, 2015 (SCI-Expanded) identifier identifier identifier

Unzipping of neuronal snare protein with steered molecular dynamics occurs in three steps

Tekpinar M., ZHENG W.
JOURNAL OF MOLECULAR MODELING , cilt.20, sa.8, 2014 (SCI-Expanded) identifier identifier identifier

Molecular dynamics investigation of Helicobacter pylori chemotactic protein CheY1 and two mutants

Yildirim A., Tekpinar M., WASSENAAR T. A.
JOURNAL OF MOLECULAR MODELING , cilt.20, sa.4, 2014 (SCI-Expanded) identifier identifier identifier

High-Resolution Modeling of Protein Structures Based on Flexible Fitting of Low-Resolution Structural Data

ZHENG W., Tekpinar M.
BIOMOLECULAR MODELLING AND SIMULATIONS , cilt.96, ss.267-284, 2014 (SCI-Expanded) Sürdürülebilir Kalkınma identifier identifier

Coarse-grained and all-atom modeling of structural states and transitions in hemoglobin

Tekpinar M., ZHENG W.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS , cilt.81, sa.2, ss.240-252, 2013 (SCI-Expanded) identifier identifier identifier

Structure-Based Simulations of the Trans location Mechanism of the Hepatitis C Virus NS3 Helicase along Single-Stranded Nucleic Acid

ZHENG W., Tekpinar M.
BIOPHYSICAL JOURNAL , cilt.103, sa.6, ss.1343-1353, 2012 (SCI-Expanded) Sürdürülebilir Kalkınma identifier identifier identifier

Accurate Flexible Fitting of High-Resolution Protein Structures to Small-Angle X-Ray Scattering Data Using a Coarse-Grained Model with Implicit Hydration Shell

ZHENG W., Tekpinar M.
BIOPHYSICAL JOURNAL , cilt.101, sa.12, ss.2981-2991, 2011 (SCI-Expanded) identifier identifier identifier

Predicting order of conformational changes during protein conformational transitions using an interpolated elastic network model

Tekpinar M., ZHENG W.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS , cilt.78, sa.11, ss.2469-2481, 2010 (SCI-Expanded) identifier identifier identifier

Large-scale evaluation of dynamically important residues in proteins predicted by the perturbation analysis of a coarse-grained elastic model

ZHENG W., Tekpinar M.
BMC STRUCTURAL BIOLOGY , cilt.9, 2009 (SCI-Expanded) Creative Commons License identifier identifier identifier
Hakemli Bilimsel Toplantılarda Yayımlanmış Bildiriler

Comparative Investigation of Normal Modes and Molecular Dynamics of Hepatitis C NS5B Protein

Asafi M., Yildirim A., Tekpinar M.
1st International Physics Conference at the Anatolian Peak, IPCAP 2016, Erzurum, Türkiye, 25 - 27 Şubat 2016, cilt.707, (Tam Metin Bildiri) Sürdürülebilir Kalkınma identifier

A MOLECULAR MODELLING APPROACH TO RATIONALE THE INHIBITORY ACTIVITY OF DERIVATIVES OF COUMARIN AGAINST CARBONIC ANHYDRASE ISOFORMS II

BOYLUĞ Z., UNAN H., Tekpınar M., EROĞLU E.
11th International Symposium on Pharmaceutical Sciences (ISOPS-11), Ankara, Türkiye, 9 - 12 Haziran 2015, ss.63-64, (Özet Bildiri)

Interactions of coumarins with two cytosolic carbonic anhydrases measured with steered molecular dynamics simulations

UNAN H., BOYLUĞ Z., Tekpınar M., EROĞLU E.
11th International Symposium on Pharmaceutical Sciences (ISOPS-11), Ankara, Türkiye, 9 - 12 Haziran 2015, ss.262-263, (Tam Metin Bildiri)

Easy GROMACS A Graphical User Interface for GROMACS Molecular Dynamics Simulation Package

DİZKIRICI A., TEKPINAR M.
American Physical Society 2015 Annual Meeting, San-Antonio, Kuzey Mariana Adaları, 2 - 06 Mart 2015

Adenilate Kinaz Proteininin Kapalı Konformasyondan Açık Konformasyona Geçişinin Moleküler Dinamik Yöntemi ile İncelenmesi

YILDIRIM A., Unan H., TEKPINAR M.
I.Ulusal Hesaplamalı Kimya Çalıştayı, Türkiye, 29 - 31 Mayıs 2014, (Özet Bildiri)
Kitaplar

Analysis of Protein Conformational Transitions Using Elastic Network Model

ZHENG W., TEKPINAR M.
Protein Dynamics, Livesay, Dennis R., Editör, Humana Press - Springer, New York, ss.159-172, 2014

Analysis of Protein Conformational Changes with Elastic Network Model

ZHENG W., Tekpınar M.
Protein Dynamics, Livesay D., Editör, Springer-Verlag , New York, ss.239-251, 2013
Metrikler

Yayın

24

Atıf (WoS)

328

H-İndeks (WoS)

9

Atıf (Scopus)

335

H-İndeks (Scopus)

10

Atıf (Scholar)

466

H-İndeks (Scholar)

12

Proje

2

Tez Danışmanlığı

2

Açık Erişim

2
BM Sürdürülebilir Kalkınma Amaçları